Language grammar¶
The grammar consists of a list of genotype or phenotype designations, separated by spaces and/or commas. The designations are described using the following nomenclature:
| Designation | Grammar expression |
|---|---|
feature deleted |
-feature |
feature at locus deleted |
-feature@locus |
feature inserted |
+feature |
site replaced with feature |
site>feature |
site (multiple integration) replaced with feature |
site>>feature |
site at locus replaced with feature |
site@locus>feature |
feature of organism |
organism/feature |
feature with type |
type.feature |
feature with variant |
feature(variant) |
feature with list of variants |
feature(var1, var2) or feature(var1; var2) |
feature with accession number |
feature#GB:123456 |
feature by accession number |
#GB:123456 |
| accession number | #database:id or #id |
fusion of feature1 and feature2 |
feature1:feature2 |
| insertion of two fused features | +feature1:feature2 |
| insertion of a list of features or fusions | +{..insertables} |
| fusion of a list and a feature | {..insertables}:feature |
| a non-integrated plasmid | (plasmid) or (plasmid ...insertables) |
| integrated plasmid vector with required insertion site | site>(vector ..insertables) |